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Getting Started
Getting Started
Inscopix Tools
Inscopix Tools
- Preprocess
  Preprocess
  - Latest
  - v2.0.1
  - v1.3.0
- Downsample
- Spatial Bandpass Filter
- Motion Correct
- Project Movie
- ΔF/F
- PCA-ICA
- Manual ROIs
  Manual ROIs
  - Latest
- CNMF-E
  CNMF-E
  - Latest
  - v4.0.2
  - v3.7.0
- Detect Events
- Automated Accept/Reject Cells
- Manually Filter Cells
  Manually Filter Cells
  - Latest
  - v0.2.9
- Detect Events from GPIO Data
- Deconvolve Traces
- Trim Movie
- Calcium Imaging QC Report
- End-to-End CNMF-E
  End-to-End CNMF-E
  - Latest
  - v6.0.1
  - v5.0.2
  - v4.0.0
- End-to-End PCA-ICA
  End-to-End PCA-ICA
  - Latest
  - v6.0.1
  - v5.6.0
- Estimate Vessel Diameter
  Estimate Vessel Diameter
  - Latest
  - v1.0.0
- Run suite2p pipeline
  Run suite2p pipeline
  - Latest
  - v0.6.1
  - v0.4.0
- suite2p Binary Conversion
  suite2p Binary Conversion
  - Latest
  - v0.2.0
- suite2p Registration
  suite2p Registration
  - Latest
  - v0.2.0
- suite2p ROI Detection
  suite2p ROI Detection
  - Latest
  - v0.1.0
- suite2p ROI Extraction
  suite2p ROI Extraction
  - Latest
  - v0.1.0
- suite2p ROI Classification
  suite2p ROI Classification
  - Latest
  - v0.1.0
- suite2p Spike Deconvolution
  suite2p Spike Deconvolution
  - Latest
  - v0.1.0
- suite2p Output Conversion
  suite2p Output Conversion
  - Latest
  - v0.2.0
- Convert to NWB
  Convert to NWB
  - Latest
  - v2.2.2
  - v2.0.1
- Convert Parquet to CSV
  Convert Parquet to CSV
  - Latest
  - v1.0.0
- Convert Cell Set To CSV And TIFF
- Convert CSV File to Events
- Convert Inscopix Movie To MP4
- Extract ISXD Movie Timestamps
- Extract Synchronized ISXD And ISXB Movie Timestamps
- Extract Tracking Data from nVision Movie
- Convert Bruker 2P Data To ISXD Movie
  Convert Bruker 2P Data To ISXD Movie
  - Latest
  - v2.0.0
  - v1.0.0
- Convert TIFF to ISXD Movie
  Convert TIFF to ISXD Movie
  - Latest
  - v1.0.0
- Map Boris Annotations To ISXD Data
- Map Annotations To ISXD Data
  Map Annotations To ISXD Data
  - Latest
  - v2.4.0
  - v2.3.0
- Compare Neural Activity Across States
  Compare Neural Activity Across States
  - Latest
  - v5.0.2
  - v4.0.3
  - v3.0.0
  - v2.1.0
- Compare Neural Activity Across Epochs
  Compare Neural Activity Across Epochs
  - Latest
  - v2.0.0
  - v1.0.0
- Peri-Event Analysis Workflow
  Peri-Event Analysis Workflow
  - Latest
  - v6.1.0
  - v5.6.0
  - v5.3.1
  - v5.1.0
- Compare Neural Circuit Correlations Across States
  Compare Neural Circuit Correlations Across States
  - Latest
  - v7.1.2
  - v6.0.0
  - v5.0.0
- Combine and Compare Peri-Event Analysis Data
  Combine and Compare Peri-Event Analysis Data
  - Latest
  - v3.0.0
  - v2.5.0
  - v2.4.2
  - v2.2.1
  - v2.0.1
- Combine and Compare Population Activity Data
  Combine and Compare Population Activity Data
  - Latest
  - v4.0.0
  - v3.0.0
  - v2.2.0
- Combine and Compare Correlation Data
  Combine and Compare Correlation Data
  - Latest
  - v5.0.1
  - v4.0.0
  - v2.2.0
- Combine and Compare Locomotion Data
- Combine and Compare Neural Activity Across Epochs
  Combine and Compare Neural Activity Across Epochs
  - Latest
- DeepLabCut Pose Estimation
  DeepLabCut Pose Estimation
  - Latest
  - v1.2.0
  - v1.0.0
- Inscopix Bottom View Mouse Pose Estimation
  Inscopix Bottom View Mouse Pose Estimation
  - Latest
  - v2.0.7
  - v1.3.5
- Train DeepLabCut Model
  Train DeepLabCut Model
  - Latest
  - v1.0.0
- Average DeepLabCut Keypoints
- Compute Locomotion Metrics
- Zone Definition Tool
  Zone Definition Tool
  - Latest
  - v1.0.0
- Zone Occupancy Analysis
  Zone Occupancy Analysis
  - Latest
  - v3.0.0
  - v2.0.3
  - v1.0.9
- nVision Animal Tracking Model
  nVision Animal Tracking Model
  - Latest
  - v1.0.5
  - v0.0.9
- CaImAn Cell Extraction Workflow
  CaImAn Cell Extraction Workflow
  - Latest
  - v1.3.2
  - v1.0.0
- CaImAn NoRMCorre
  CaImAn NoRMCorre
  - Latest
  - v1.0.0
- CaImAn Source Extraction
  CaImAn Source Extraction
  - Latest
  - v1.0.0
- CaImAn Spike Extraction
  CaImAn Spike Extraction
  - Latest
  - v1.0.0
- Convert H5 To CSV
  Convert H5 To CSV
  - Latest
  - v1.0.0
- Smoothen Movie Across Time
  Smoothen Movie Across Time
  - Latest
  - v1.0.0
- Downsample Traces
  Downsample Traces
  - Latest
  - v1.0.0
- Recover Corrupt ISXD Movie
  Recover Corrupt ISXD Movie
  - Latest
  - v1.0.0
- Compare Peri-Event Activity Across Epochs
  Compare Peri-Event Activity Across Epochs
  - Latest
  - v1.0.0
- Combine and Compare Peri-Event Data Across Epochs
  Combine and Compare Peri-Event Data Across Epochs
  - Latest
  - v1.0.0
- CaImAn Multi-Session Registration
  CaImAn Multi-Session Registration
  - Latest
  - v1.3.0
  - v1.2.0
  - v1.0.0
- Cellpose Segmentation
  Cellpose Segmentation
  - Latest
  - v1.0.0
Custom Tools
Custom Tools
Release Notes
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User Guide: Generate Output Data¶