Organization admins can now view all organization projects from the organization usage page, instead of the home page. This new table view of all projects enables admins to easily inventory their IDEAS subscription usage, as well as modify project access when needed.
Organization admins can edit the organization name by clicking the gear icon > Edit Organization Name from the organization home page.
All users can now filter and sort projects from either the user or organization home page.
Filter and sorting state will now be remembered when navigating back/forward from these pages.
Users can filter projects to any role/access level.
Users can pin projects to the top of their user or organization homepage to easily access frequently visited projects.
Users can cancel a file upload in progress.
Users can cancel an analysis task in progress.
For uploaded files where 1) no file type is detected or 2) metadata and preview generation failed, users can select which file type. For supported types (e.g., Bruker 2P movies), this will trigger metadata extraction and preview generation.
All tools that output experiment annotation files now include all column names in the output file metadata, which can be directly used as inputs in downstream tools.
Peri-Event Analysis Workflow tool now only analyzes 'accepted' cells when present in cell set. Otherwise, if all cells have no status or are 'undecided', all cells are included.
Projects can now be duplicated (cloned) within and across organizations
Organization admins can now manage their organization's members, including the ability to invite new users to join their organization
New users who have been invited to join an organization can self-register an IDEAS account
Users can be removed from organizations by organization admins
Analysis tables now support multiple versions on an analysis on a single table instead of requiring an entirely new table to be created with each version.
Compatible versions that do not change the input data or parameters of an analysis will be available on the same table alongside existing versions, and users can see and choose what version a task will be run with.
New versions that change the inputs or parameters can be added as a new tab to existing tables
Users can now manually specify the file type of any uploaded file that was not automatically identified
Users can also view the processing log for files that failed to extract previews or generate metadata to understand why the failure occurred
Added several new notifications to be displayed for events like being invited to an organization, completion of project cloning, changes to user role in an organization, and failure to process an uploaded file.
A new browser to select analyses is now available when creating new analysis tables, organizing analyses by toolkit and allowing users to name the new table before creating it
Added support for processing timestamp events h5 files
Add support for converting behavior videos to the NWB format
Improve and optimize conversion of large miniscope movies to the NWB format
Extend support for exporting behavior videos to DANDI along with miniscope movies, cell sets, and event sets
Update the crop rectangle and ROI parameters to use the new ROI editor interface in the Preprocess, Motion Correct, End-To-End CNMF-E, and End-To-End PCA-ICA tools
Rename Export Movie to MP4 tool to Convert Inscopix Movie to MP4
The file browser can now be displayed from the main project page and will display all files in the project across all datasets and analyses, including files without a dataset assignment
Uploaded files can be assigned/reassigned to empty cells in a dataset by clicking on the new assignment icon when hovering the cell (alternative to dragging and dropping from the file browser)
Styling updates to increase the amount of information that can be displayed in dataset, analysis table, and tasks views
Archive/unarchive/delete actions are available when viewing file details in an analysis table
Added expandable details to the All Tasks view to display a summary of task inputs and results
Added ability to search and navigate with the keyboard when selecting file inputs for analysis tables
Tasks can now be deleted from analysis tables after execution - deleting a completed task will also delete its result files
The new “View All Tasks” page provides a central interface for viewing and auditing all submitted tasks within a project (including ones that have been deleted from their original analysis table)
A “Recording Session IDs” column has been added to the analysis table view that displays the recording(s) associated with the task and its results (automatically read from the selected input files)
The “Autofill from recording” action on the new recordings column will attempt to fill in a task’s input files based on a selected recording (if a single matching file can be found)
A new streamlined “Add Column” dialog simplifies the process of inserting uploaded data, metadata, and result columns to datasets
Improved the column deletion and removal process on datasets, including a new group header menu that allows you to delete any or all grouped analysis result columns in a single action.
The new dialog that appears will display any linked columns that will also be automatically removed
Deleting an uploaded data column will also delete the files assigned to it (a warning will display)
Projects display your level of access on the home page and project dashboard
Enabled range selection on dataset recordings tables
Data selector improved with better support for smaller screen sizes & auto-selection of options with only one choice
Redesigned the usage metrics dialog in the menu bar and on the Organization page
Users can directly export NWB files from IDEAS to the DANDI Archive to publicly share and store their data.
New permissions and sharing capabilities to allow users to share Projects with specific users in their organization and specify levels of access, including view-only, edit access, and administration.
IDEAS cloud computing resource monitoring has now migrated to using a new compute credits system. Users can directly see how many compute credits are consumed by each Analysis Table task.
Added ability to directly draw a region of interest on an image to use as input for spatially cropping miniscope movies during preprocessing.
Released new Convert to NWB tool that enables conversion of Inscopix miniscope movies, cell sets, and event sets to the standard Neurodata Without Borders (NWB) format.
Released our first analysis tools for analyzing rodent behavior movie data, including:
Inscopix-trained DeepLabCut model for bottom up view angle pose estimation using GPUs (Inscopix Bottom View Mouse Pose Estimation). Compatible with .isxb (nVision), .mp4, and .avi movie inputs.
Estimate center-of-mass from DeepLabCut outputs with Average DeepLabCut Keypoints and visualize path trajectory over time and density.
Compute Locomotion Metrics from center-of-mass estimate, including, instantaneous speed, distance traveled, and time spent at rest versus moving.
Added ability to map behavior analysis outputs to Inscopix miniscope data for neurobehavioral analysis with the new Map Annotations To ISXD Data tool.
Added an optional reference image parameter to the Preprocess, End-to-End PCA-ICA, and End-to-End CNMF-E tools to facilitate spatial cropping using the new ROI drawing feature.
New Trim Movie tool to remove frames from a miniscope movie
New Deconvolve Traces tool to estimate the underlying neural spikes and biosensor kinetics (e.g. GCaMP activity) from noisy calcium imaging fluorescent time-series data
New Detect Events tool to convert a CSV file to event timestamps that can be used in downstream analyses (e.g. Peri-Event Analysis Workflow)
The Uploaded Files table is now a general File Browser that includes analysis result files and displays source details (ie. user-uploaded vs. generated through an analysis)
Added text search and uploaded/analysis result filters to File Browser
Simplified the menu bar in the Dataset view and added shortcuts to view Notes, Analyses, and File sidebars
Enabled renaming files from the File Browser view
Enabled downloading files from the File Browser view
Enabled reordering and ungrouping of analysis result columns in dataset
Added linked analysis table details to analysis result column headers
Enabled viewing of input file details and previews in analysis tables
Added optional descriptions to saved versions of datasets, made name optional when saving a version
Added descriptive titles to application pages that can be seen in browser tabs and history
Analysis results have more descriptive names (naming convention follows IDPS)
New cell set data preview
New CSV events data preview
Added ISXD image previews
Can view the current End-User License Agreement from the Settings page