Convert Cell Set To CSV And TIFF¶
Overview and purpose¶
This tool allows you to convert a ISXD cell set file to a CSV file containing cell trace data and a set of TIFF files containing cell footprints.
Use this tool if you want to use this data in another application that requires data to be in these formats.
This tool uses 1.0 compute credits per hour.
Inputs¶
| Parameter | Required? | Default | Description |
|---|---|---|---|
| Cell Set Files | True | N/A | Cell set files to convert |
| Time Reference | True | start | How time is encoded: as unix time or from the start of the recording |
File Inputs¶
| Source Parameter | File Type | File Format |
|---|---|---|
| Cell Set Files | cell_set | isxd |
Cell Set Files¶
One or more cell set files. If more than one cell set file is provided, they should be a valid series. A series input can also be provided.
Time reference¶
Should be either start or unix.
The time reference for the CSV time stamps.
If start is used, the time stamps represent the seconds since the start of the cell set.
If unix is used, the time stamps represents the second since the Unix epoch.
Outputs¶
CSV file with traces¶
A CSV file with trace data, that may look like the following. Each column corresponds to a single cell. Each row is a time point.
| C000 | C001 | C002 | |
|---|---|---|---|
| Time(s)/Cell Status | undecided | undecided | undecided |
| 0 | -26.62759 | -135.2142 | -34.85344 |
| 0.04996131025599743 | 69.1873 | -131.7961 | -66.60008 |
| 0.09992262051199485 | -40.10349 | -113.2359 | -110.6507 |
| 0.1498839307679923 | -11.89747 | -165.0559 | -46.03569 |
| 0.1998452410239897 | 16.62294 | -130.826 | -35.59018 |
| 0.2498065512799871 | -58.86952 | -167.7288 | -119.0372 |
| 0.2997678615359846 | -45.28465 | -186.1946 | -82.65872 |
| 0.349729171791982 | -53.28547 | -104.3535 | -30.86355 |
| 0.3996904820479794 | -10.20237 | -114.864 | -41.79532 |
| 0.4496517923039768 | 11.62076 | -99.97502 | -63.27372 |
| 0.4996131025599743 | -10.42937 | -134.6712 | -65.38551 |
| 0.5495744128159716 | -17.20621 | -136.536 | -45.65766 |
| 0.5995357230719691 | -63.70555 | -120.1895 | -70.97878 |
| 0.6494970333279665 | -18.56801 | -155.5622 | -46.73368 |
ZIP file with cell footprints¶
This zip file contains a set of TIFF images, one for each cell's footprint.